RESEARCH PUBLICATIONS LAB MEMBERS ASSOCIATED WEBSITES

LAB DISCOVERIES TECHNOLOGY APPLICANTS

Publications

2019

Chung JE, Joo HR, Fan JL, Liu DF, Barnett AH, Chen S, Geaghan-Breiner C, Karlsson MP, Karlsson M, Lee KY, Liang H, Magland JF, Pebbles JA, Tooker AC, Greengard LF, Tolosa VM, Frank LM. High-Density, Long-Lasting, and Multi-region Electrophysiological Recordings Using Polymer Electrode Arrays. Neuron. 2019 Jan 2; 101(1):21-31.e5. PMID: 30502044 Link

 

2018

Joo H, Frank L. The hippocampal sharp wave-ripple in memory retrieval for immediate use and consolidation. Nat Rev Neurosci. 2018 Dec; 19 (12):744-757. PMID: 30356103 Link

 

Willsey AJ, Morris MT, Wang S, Willsey HR, Sun N, Teerikorpi N, Baum TB, Cagney G, Bender KJ, Desai TA, Srivastava D, Davis GW, Doudna J, Chang E, Sohal V, Lowenstein DH, Li H, Agard D, Keiser MJ, Shoichet B, von Zastrow M, Mucke L, Finkbeiner S, Gan L, Sestan N, Ward ME, Huttenhain R, Nowakowski TJ, Bellen HJ, Frank LM, Khokha MK, Lifton RP, Kampmann M, Ideker T, State MW, Krogan NJ. The Psychiatric Cell Map Initiative: A Convergent Systems Biological Approach to Illuminating Key Molecular Pathways in Neuropsychiatric Disorders. Cell. 2018 Jul 26; 174 (3):505-520. PMID: 30053424 Link

 

Rezaei MR, Gillespie AK, Guidera JA, Nazari B, Sadri S, Frank LM, Eden UT, Yousefi A. A Comparison Study of Point-Process Filter and Deep Learning Performance in Estimating Rat Position Using an Ensemble of Place Cells. Conf Proc IEEE Eng Med Biol Soc. 2018 Jul; 2018:4732-4735. PMID: 30441406 Link

 

Sosa M, Frank LM. Are We There Yet? Identification of Reward-Selective Cells in the Hippocampus. NEURON 99(1):7-10 11 Jul 2018. PMID: 30001513 Link

 

Yu JY, Liu DF, Loback A, Grossrubatscher I, Frank LM. Specific hippocampal representations are linked to generalized cortical representations in memory. Nat Commun. 2018 Jun 7; 9 (1):2209. PMID: 29880860 Link

 

Kay K, Frank L. Three brain states in the hippocampus and cortex. Hippocampus. 2018 May 3; (3):184-238. PMID: 29722465 Link

 

Sosa M, Gillespie AK, Frank L. Neural Activity Patterns Underlying Spatial Coding in the Hippocampus. Curr Top Behav Neurosci. 2018; 37:43-100. PMID: 27885550 Link

 

2017

Tang W, Shin JD, Frank L, Jadhav SP (2017). Hippocampal-Prefrontal Reactivation during Learning Is Stronger in Awake Compared with Sleep States. J Neurosci. 2017 Dec 06; 37(49):11789-11805. PMID: 29089440. Link

 

Chung JE, Magland JF, Barnett AH, Tolosa VM, Tooker AC, Lee KY, Shah KG, Felix SH, Frank L, Greengard (2017). A Fully Automated Approach to Spike Sorting. Neuron. 2017 Sep 13; 95(6):1381-1394.e6. PMID: 28910621. Link

 

Yu JY, Kay K, Liu DF, Grossrubatscher I, Loback A, Sosa M, Chung JE, Karlsson MP, Larkin MC, Frank L (2017). Distinct hippocampal-cortical memory representations for experiences associated with movement versus immobility. Elife. 2017 Aug 03; 6. Link

 

Rothschild G, Eban E, Frank LM (2017). A cortical-hippocampal-cortical loop of information processing during memory consolidation. Nature neuroscience. 2017; 20(2):251-259. Link

 

2016

Papale AE, Zielinski MC, Frank LM, Jadhav SP, Redish AD (2016). Interplay between Hippocampal Sharp-Wave-Ripple Events and Vicarious Trial and Error Behaviors in Decision Making. Neuron. 2016; 92(5):975-982. Link

 

Deng X, Liu DF, Karlsson MP, Frank LM, Eden UT (2016). Rapid classification of hippocampal replay content for real-time applications. Journal of neurophysiology. 2016; 116(5):2221-2235. Link

 

Gillespie AK, Jones EA, Lin YH, Karlsson MP, Kay K, Yoon SY, Tong LM, Nova P, Carr JS, Frank LM, Huang Y (2016). Apolipoprotein E4 causes age-dependent disruption of slow gamma oscillations during hippocampal sharp-wave ripples. Neuron, May 18;90(4):740-751. Link

 

Jadhav SP, Rothschild G, Roumis DK, Frank LM (2016). Coordinated excitation and inhibition of prefrontal ensembles during awake hippocampal sharp-wave ripple events. Neuron, April 6;90(1):1613-1621. Link

 

Kay K, Sosa M, Chung JE, Karlsson MP, Larkin MC, Frank LM (2016). A hippocampal network for spatial coding during immobility and sleep. Nature, Mar 10;531(7593):185-190. Link

 

2015

Roumis DK, Frank LM (2015). Hippocampal sharp-wave ripples in waking and sleeping states. Curr Opin Neurobiol, Dec;35:6-12. Link

 

Yu JY, Frank LM (2015). Hippocampal-cortical interaction in decision making. Neurobiol Learn Mem. Jan;117:34-41. Link

 

Deng X, Liu DF, Kay, K, Frank LM, Eden UT (2015). Clusterless decoding of position from multiunit activity using a marked point process filter. Neural Comput. Jul;27(7):1438-1460. Link

 

2014

Larkin MC, Lykken C, Tye LD, Wickelgren JG, Frank LM (2014). Hippocampal output area CA1 broadcasts a generalized novelty signal during an object-place recognition task. Hippocampus. Jul; 24(7):773-83. Link

 

Dabaghian Y, Brandt VL, Frank LM(2014). Reconceiving the hippocampal map as a topological template. Elife. 2014;3:e03476. Link

 

2013

Singer AC, Carr MF, Karlsson MP, Frank LM (2013). Hippocampal SWR activity predicts correct decisions during the initial learning of an alternation task. Neuron. March 20; 77(6):1163-1173. Link

 

Kemere C, Carr MF, Karlsson MP, Frank LM (2013): Rapid and continuous modulation of hippocampal network state during exploration of new places. PLoS One. Sep 2; 8(9):e73114. Link

 

Felix SH, Shah KG, Tolosa VM, Sheth HJ, Tooker AC, Delima TL, Jadhav SP, Frank LM, Pannu SS (2013). Insertion of flexible neural probes using rigid stiffeners attached with biodissolvable adhesive. J Vis Exp. Sep 27(79):e50609. Link

 

2012

Warden MR, Selimbeyoglu A, Mirzabekov JJ, Lo M, Thompson KR, Kim SY, Adhikari A, Tye KM, Frank LM, Deisseroth K. (2012). A prefrontal cortex-brainstem neuronal projection that controls response to behavioural challenge. Nature. 492:428-432. Link

 

Carr MF, Karlsson MP, Frank LM (2012). Transient slow gamma synchrony underlies hippocampal memory replay. Neuron. 75(4):700-713. Link

 

Carr MF, Frank LM (2012). A single microcircuit with multiple functions: state dependent information processing in the hippocampus.  Current Opinion in Neurobiology. 22(4):704-708. Link

 

Dabaghian Y, Memoli F, Frank LM, Carlsson G (2012). A topological paradigm for hippocampal spatial map formation using persistent homology.  PLoS Computational Biology. 8(8):e1002581. Link

 

Kim S, Ganguli S, Frank LM (2012). Spatial information outflow from the hippocampal circuit: distributed spatial coding and phase precession in the subiculum.  Journal of Neuroscience. 32(34):11539-11558. Link

 

Jadhav SP, Kemere C, German PW, Frank LM (2012). Awake hippocampal sharp-wave ripples support spatial memory.  Science. 336(60 87):1454-1458. Link

 

2011

Carr MF, Jadav SP, Frank LM (2011). Hippocampal replay in the awake state: a potential substrate for memory consolidation and retrieval. Nature Neuroscience. Jan 26;14:147-153. Link

Anikeeva P, Andalman A, Witten I, Warden M, Goshen I, Grosenick L, Gunaydin L, Frank LM,  Deisseroth K (2011). Optetrode: a multichannel readout for optogenetic control in freely moving mice. Nature Neuroscience.  Dec 4;15(1):163-70. Link

 

Cheng S, Frank LM (2011). The structure of networks that produce the transformation from grid cells to place cells. Neuroscience.  197 (2011) 293306. Link

 

2010
Singer AC, Karlsson MP, Nathe AR, Carr MF, Frank LM (2010). Experience-dependent development of coordinated hippocampal spatial activity representing the similarity of related locations. Journal of Neuroscience. Sep 1;30(35):11586-11604. Link

Smith, AC, Nguyen VK, Karlsson MP, Frank LM, Smith P (2010). Probability of repeating patterns in simultaneous neural data. Neural Computation, Oct;22(10):2522-36.


2009
Singer AC, Frank LM (2009). Rewarded outcomes enhance reactivation of experience in the hippocampus. Neuron. Dec 24;64(6):910-921.
Link

Karlsson MP, Frank LM (2009). Awake replay of remote experiences in the hippocampus. Nature Neuroscience. Jul;12(7):913-8. Link

Kim SM, Frank LM (2009). Hippocampal lesions impair rapid learning of a continuous spatial alternation task. PLoS ONE 4:e5494. Link

Jadhav SP, Frank LM (2009). Reactivating memories for consolidation.  Neuron, 62:745-746. Link

 

2008
Karlsson M, Frank LM (2008) A network mechanism for the formation of sparse, informative representations in the hippocampus. Journal of Neuroscience. Dec 24;28(52):14271-81.
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Cheng S, Frank LM (2008) New experiences enhance coordinated neural activity in the hippocampus. Neuron. Jan 24;57(2):303-13.
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2006
Frank LM, Brown EN, Stanley GB (2006) Hippocampal and cortical place cell plasticity: Implications for episodic memory. Hippocampus. 16(9):775-84.
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2004
Frank LM, Stanley GB, Brown EN (2004) Hippocampal plasticity across multiple days of exposure to novel environments. Journal of Neuroscience. Sep 1;24(35):7681-9.
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Eden UT, Frank LM, Barbieri R, Solo V, Brown EN (2004) Dynamic analysis of neural coding by point process adaptive filtering. Neural Computation. 16:971-998.

Barbieri R, Frank LM, Nguyen DP, Quirk MC, Solo V, Wilson MA, Brown EN (2004) Dynamic analyses of information encoding in neural ensembles. Neural Computation. 16: 277-307.

Smith AC, Frank LM, Wirth S, Yanike M, Hu D, Kubota Y, Graybiel AM, Suzuki WA, Brown EN (2004) Dynamic analysis of learning in behavioral experiments. Journal of Neuroscience. 24: 447-461.

 

2003
Wirth S, Yanike M, Frank LM, Smith AC, Brown EN, Suzuki WA (2003) Single neurons in the monkey hippocampus and learning of new associations. Science, 300:1578-1581.

Nguyen DP, Frank LM, Brown EN (2003) An application of reversible-jump Markov chain Monte Carlo to spike classification of multi-unit extracellular recordings. Network, 14:61-82.

Frank LM, Brown EN (2003) Persistent activity and memory in the entorhinal cortex. Trends in Neurosciences, 26:400-401.

Nathe AR, Frank LM (2003) Making space for rats: from synapse to place code. Neuron, 39:730-731. 

 

2002

Frank LM, Eden, UT, Wilson, MA, Brown, EN (2002) Contrasting patterns of receptive field plasticity in the hippocampus and the entorhinal cortex: an adaptive filtering approach. Journal of Neuroscience. May 1;22(9).

Brown EN, Barbieri R, Ventura V, Kass R, Frank LM (2002) A note on the time-rescaling theorem and its implications for neural data analysis. Neural Computation. 14(2):325-46.

Frank LM, Brown, EN, Wilson, MA (2002) Entorhinal place cells: Trajectory encoding. In: The Neural Basis of Navigation: Evidence from Single Cell Recording. (P. Sharp Ed.) Kluwer Press. pp. 97-116.


2001

Brown EN, Nguyen DP, Frank LM, Wilson MA, Solo V (2001) An analysis of neural receptive field dynamics by point process adaptive filtering. Proceedings of the National Academy of Sciences, 98(21): 12261-12266.

Frank LM, Brown EN, and Wilson MA (2001) A comparison of the firing properties of putative excitatory and inhibitory neurons from CA1 and the entorhinal cortex. Journal of Neurophysiology, 86(4): 2029-2049.

Barbieri R, Frank LM, Quirk MC, Wilson MA, Brown EN (2001) Diagnostic methods for statistical models of place cell spiking activity. Neurocomputing, 38 (4):1087-1093.

Barbieri, R, Quirk MC, Frank LM , Wilson MA , Brown EN (2001) Construction and analysis of non-Poisson stimulus response models of neural spike train activity. Journal of Neuroscience Methods. 105: 25-37, 2001.

2000

Frank LM, Brown EN, and Wilson MA (2000) Trajectory encoding in the hippocampus and entorhinal cortex. Neuron, 27: 169-178.
Barbieri R, Frank LM, Quirk MC, Wilson MA, Brown EN (2000) A time-dependent analysis of spatial information encoding in the rat hippocampus. Neurocomputing. 32:629-635.

 

1998
Brown EN, Frank LM, Tang D, Quirk MC, Wilson MA (1998) A statistical paradigm for neural spike train decoding applied to position prediction from ensemble firing patterns of rat hippocampal place cells. Journal of Neuroscience. 18:7411-7425.